{"id":739,"date":"2012-02-10T09:55:00","date_gmt":"2012-02-10T09:55:00","guid":{"rendered":"http:\/\/41j.com\/blog\/?p=739"},"modified":"2012-02-10T09:55:00","modified_gmt":"2012-02-10T09:55:00","slug":"convert-dna-string-to-binary","status":"publish","type":"post","link":"https:\/\/41j.com\/blog\/2012\/02\/convert-dna-string-to-binary\/","title":{"rendered":"Convert DNA string to binary"},"content":{"rendered":"<p>Getting fed up with writing this, so here&#8217;s some basic code to do it:<\/p>\n<pre class=\"brush: cpp; title: ; notranslate\" title=\"\">\r\n#include &lt;iostream&gt;\r\n\r\nusing namespace std;\r\n\r\nuint32_t dna_number(string s) {\r\n\r\n  uint32_t num = 0;\r\n\r\n  for(size_t n=0;n&lt;s.size();n++) {\r\n\r\n    num = num &lt;&lt; 2;\r\n    if(s&#x5B;n] == 'A') num += 0;\r\n    if(s&#x5B;n] == 'C') num += 1;\r\n    if(s&#x5B;n] == 'G') num += 2;\r\n    if(s&#x5B;n] == 'T') num += 3;\r\n\r\n  }\r\n  return num;\r\n}\r\n\r\nint main(int argc,char **argv) {\r\n  cout &lt;&lt; dna_number(&quot;AAAAA&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAAAC&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAAAG&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAAAT&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAACA&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAACC&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAACG&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAACT&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAAGA&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAAGC&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAAGG&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAAGT&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAATA&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAATC&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAATG&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AAATT&quot;) &lt;&lt; endl;\r\n  cout &lt;&lt; dna_number(&quot;AACAA&quot;) &lt;&lt; endl;\r\n}\r\n<\/pre>\n","protected":false},"excerpt":{"rendered":"<p>Getting fed up with writing this, so here&#8217;s some basic code to do it: #include &lt;iostream&gt; using namespace std; uint32_t dna_number(string s) { uint32_t num = 0; for(size_t n=0;n&lt;s.size();n++) { num = num &lt;&lt; 2; if(s&#x5B;n] == &#8216;A&#8217;) num += 0; if(s&#x5B;n] == &#8216;C&#8217;) num += 1; if(s&#x5B;n] == &#8216;G&#8217;) num += 2; if(s&#x5B;n] == [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":false,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[1],"tags":[],"class_list":["post-739","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_shortlink":"https:\/\/wp.me\/p1RRoU-bV","jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/posts\/739","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/comments?post=739"}],"version-history":[{"count":1,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/posts\/739\/revisions"}],"predecessor-version":[{"id":740,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/posts\/739\/revisions\/740"}],"wp:attachment":[{"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/media?parent=739"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/categories?post=739"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/tags?post=739"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}