{"id":7052,"date":"2023-09-14T04:23:23","date_gmt":"2023-09-14T04:23:23","guid":{"rendered":"https:\/\/41j.com\/blog\/?p=7052"},"modified":"2023-09-14T04:24:03","modified_gmt":"2023-09-14T04:24:03","slug":"pacific-biosciences-accuracy-notes","status":"publish","type":"post","link":"https:\/\/41j.com\/blog\/2023\/09\/pacific-biosciences-accuracy-notes\/","title":{"rendered":"Pacific Biosciences Accuracy Notes"},"content":{"rendered":"\n
<\/td>Date<\/td>Overall<\/td>Insertions<\/td>Deletions<\/td>Substitutions<\/td>Read Length<\/td>Ref<\/td><\/tr>
PacBio RS II<\/td>~2013<\/td>~11%<\/td>\u201cpredominantly indel\u201d<\/td>\u201cpredominantly indel\u201d<\/td>\u201cpredominantly indel\u201d<\/td><\/td>Vendor<\/u><\/a><\/td><\/tr>
PacBio RS II<\/td>2020<\/td>~13%<\/td>8%<\/td>3%<\/td>1.68%<\/td><\/td>Academic Benchmark<\/u><\/a><\/td><\/tr>
PacBio RS II CLR<\/td>2020<\/td>12.88%<\/td>8.04%<\/td>3.16%<\/td>1.68%<\/td>8899<\/td>Academic Benchmark<\/u><\/a><\/td><\/tr>
PacBio RS II Subread<\/td>2017<\/td>14.2%<\/td>5.92%<\/td>3.01%<\/td>5.27%<\/td><\/td>Academic Benchmark<\/u><\/a><\/td><\/tr>
PacBio Sequel I CLR<\/td>2019<\/td>12%<\/td><\/td><\/td><\/td><\/td>Inferred from Vendor Claim<\/u><\/a><\/td><\/tr>
PacBio Sequel II CLR<\/td>2019<\/td>10%<\/td><\/td><\/td><\/td>~50Kb<\/td>Inferred from Vendor Claim<\/u><\/a><\/td><\/tr>
Revio (Subread)<\/td>2023<\/td>10%<\/td><\/td><\/td><\/td>All: 100Kb+?<\/td>Inferred from Vendor Claim<\/td><\/tr>
PacBio RS II CCS<\/td>2017<\/td>1.72<\/td>0.087%<\/td>0.34%<\/td>1.3%<\/td>1772<\/td>Academic Benchmark<\/u><\/a><\/td><\/tr>
PacBio Sequel HiFi<\/td>2022<\/td>0.25%<\/td>0.1%<\/td>0.13%<\/td>0.02%<\/td><\/td>Academic Note<\/u><\/a><\/td><\/tr>
PacBio Sequel II CCS<\/td>2019<\/td>0.14%<\/td><\/td><\/td><\/td><\/td>Academic Benchmark<\/u><\/a><\/td><\/tr>
PacBio Sequel  II HiFi<\/td>2019<\/td><0.1%<\/td><\/td><\/td><\/td>20Kb<\/td>Vendor Claim<\/u><\/a><\/td><\/tr>
Revio (All HiFi)<\/td>2023<\/td><0.1%<\/td><\/td><\/td><\/td>16.5Kb<\/td>Vendor Claim<\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"

Date Overall Insertions Deletions Substitutions Read Length Ref PacBio RS II ~2013 ~11% \u201cpredominantly indel\u201d \u201cpredominantly indel\u201d \u201cpredominantly indel\u201d Vendor PacBio RS II 2020 ~13% 8% 3% 1.68% Academic Benchmark PacBio RS II CLR 2020 12.88% 8.04% 3.16% 1.68% 8899 Academic Benchmark PacBio RS II Subread 2017 14.2% 5.92% 3.01% 5.27% Academic Benchmark PacBio Sequel […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[1],"tags":[],"class_list":["post-7052","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_shortlink":"https:\/\/wp.me\/p1RRoU-1PK","jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/posts\/7052","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/comments?post=7052"}],"version-history":[{"count":1,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/posts\/7052\/revisions"}],"predecessor-version":[{"id":7053,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/posts\/7052\/revisions\/7053"}],"wp:attachment":[{"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/media?parent=7052"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/categories?post=7052"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/41j.com\/blog\/wp-json\/wp\/v2\/tags?post=7052"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}